Biological Invasions
○ Springer Science and Business Media LLC
Preprints posted in the last 90 days, ranked by how well they match Biological Invasions's content profile, based on 14 papers previously published here. The average preprint has a 0.02% match score for this journal, so anything above that is already an above-average fit.
Tamechika, M. M.; Shahdadi, A.; Chan, B. K. K.
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Fistulobalanus albicostatus Pilsbry, 1916 (Thoracica: Balanidae) is a tropical to temperate species distributed in the NW Pacific. The previously known northernmost record of this species in Japan was from Aomori Prefecture, at the northern end of Honshu Island, Japan. However, field surveys conducted in 2023 and 2026 confirmed the occurrence of F. albicostatus in Hakodate Bay, the southern end of Hokkaido, Japan, across the Tsugaru Strait, thereby extending the northern limit of its known distribution. A line transect survey conducted in May 2026 recorded seven living individuals within an area of 128 m. F. albicostatus was rare on the mid-high shores, accounting for only 2% of all barnacle individuals in a quadrat survey. The basal diameter of the living individuals ranged from 0.76 to 1.23 cm, and all individuals possessed ovaries. Based on characteristics of both morphological and COI gene, the specimens were identified as F. albicostatus, and belonged to the same haplotype of populations that are present in Honshu Island. The establishment of F. albicostatus in Hokkaido suggests an ongoing northward range shift of this warm-water species, with the potential for further expansion under continued ocean warming.
Schizas, N. V.; Toledo-Rodriguez, D. A.; Jimenez Marrero, N. M.; Weil, E.; Veglia, A. J.; McFadden, C. S.; Munoz-Maravilla, J. D.; Espinosa Saez, J.; Martinez Perez, A.; Estrada, R.; del Carmen Luguera, Y.
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Octocoral colonies with unusual morphology were detected in September 2022 and October 2023 in two coastal areas east of Havana, Cuba, and tentatively identified as Unomia stolonifera. U. stolonifera is an invasive octocoral from the Indo-Pacific that was first reported in the Caribbean off Venezuela in the 2000s, where it has spread rapidly, smothering coral reefs and substantially altering benthic communities. After obtaining tissue samples from a Cuban octocoral colony, we re-examined the specimen using molecular barcoding of three mitochondrial regions (16S/ND2, mtMutS, COI) and the nuclear large ribosomal subunit (28S rRNA), and we unequivocally identified it as Xenia umbellata. X. umbellata, a native of the Red Sea, was first identified in southern Puerto Rico in October 2023 and has since been found in various marine ecosystems along the southern coast of the island. The presence of either invasive octocoral species in Cuba or elsewhere in the Caribbean would be of a serious environmental concern due to their documented tolerance, totipotentiality, propagation capacity and significant negative interactions with local benthic fauna. Attempts to eradicate the invasive soft coral colonies from Cuban waters have been initiated with apparent success, helping to control further expansion. The most likely introduction pathway is the accidental or intentional releases from the aquarium trade but transport via ballast water cannot be ruled out. We cannot discount the possibility of independent invasion events from different routes to Puerto Rico and Cuba occurring within a year of each other. Propagation from Cuba to Puerto Rico, or vice versa, which we consider highly improbable, would likely imply that soft coral populations may also have been established on Hispaniola but have remained undetected in the Dominican Republic and Haiti to date.
RODRIGUEZ-GARCIA, E.; FERNANDEZ DEL CAMPO, J.; DOBSON, J. Y.; FONFRIA, E. S.; BORDEHORE, C.; PENA-MARTIN, C.
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The non-indigenous brown macroalga Rugulopteryx okamurae has emerged as one of the most aggressive marine invaders in European waters, deeply altering benthic communities and causing severe socioeconomic impacts. While its expansion has been extensively documented along the southern Iberian Peninsula, understanding the dynamics of its northward range expansion along the Spanish Mediterranean coast remains critical for coastal management. This study documents the first formal record of R. okamurae in Calpe (Alicante), representing its current northernmost distribution limit within the Comunitat Valenciana. Sampling was conducted through an initial opportunistic scuba diving observation along the surrounding waters of the Penyal dIfac Natural Park, followed by targeted underwater surveys and an ad hoc inspection of commercial bottom-trawling nets drying at the port of Calpe during June 2026. Morphological and anatomical identification was confirmed through cross-sections of the thallus under optical microscopy, revealing the presence of both the thick and intermediate morphotypes of the species. The collected specimens were found either entangled within a native photophilic algal canopy in shallow waters or recovered from deeper offshore fishing grounds. Given the absence of records in the area during 2023-2025 surveys, these findings suggest either a very recent front-wave colonization event or a contribution from nearby, yet undetected, established patches, driven by secondary local dispersal mechanisms such as drifting fragments and explicitly highlighting commercial fishing activities as an active vector. Furthermore, considering that the species was recorded within a marine protected area and deeper environments, these results highlight a potential ecological threat to local benthic ecosystems, emphasizing the urgent need f or competent authorities to implement spatiotemporal monitoring and public awareness campaigns to prevent the definitive establishment of this invader.
Brune, M.; Howe, D. K.; Mc Donnell, R. J.; Denver, D.
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Urbanization has been previously shown to affect evolution of plants and animals by restricting gene flow, increasing genetic drift, and causing divergent selection between rural and urban populations, however, the effect of urbanization on terrestrial gastropod evolution has only been minimally researched. Most research on terrestrial gastropods primarily focusing on invasive pest species, and little attention is given to native species like Ariolimax columbianus (Pacific banana slug). There is no current published research on the phylogeography of A. columbianus. In this study, surface epithelial cells from 66 Ariolimax columbianus individuals were collected from 11 locations around Corvallis, Oregon, and one site in northern California. These samples were amplified and sequenced at two loci: cytochrome oxidase 1 (CO1) and the internal transcribed spacer 2 (ITS-2). This data was used to generate maximum-likelihood phylogenetic trees to better understand the population genetics of these local native gastropods. The CO1 phylogenetic analysis showed two major haplotypes around the city of Corvallis - northwestern and southern, while the ITS-2 phylogenetic analysis showed three general haplotypes around the city - northern, western, and southern. The results in this study show the presence of genetic breaks between many of these populations, possibly due to a combination of factors including anthropogenic fragmentation, natural barriers, and the low active dispersal ability of A. columbianus. However, the extent that each of those factors has on disrupting gene flow and explaining patterns of genetic variation in this species requires further research. The present study acts as a foundation for the development of future research on banana slug phylogenetics and population genetic structure.
Stinson, S. A.; Fiske, A.; Funk, E. C.; Kulig, E.; Brown, S.; Gille, D.; Schreier, A.; Sanders, L.; Nagarajan, R. P.; Barney, B.; Baerwald, M.
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Here, we report the first genetic confirmation of golden mussels (Limnoperna fortunei) in North America, and the subsequent development, optimization, and deployment of golden mussel eDNA monitoring procedures. Aquatic species invasions are economically costly, disrupt ecosystem functionality, and impact native aquatic communities. Early detection of new invasive species enables rapid response via implementation of effective eradication or control measures and is key for reducing harmful outcomes. Initial species detection and taxonomic identification can be aided by genetic methods that have high detection sensitivity and accuracy. Genetic methods such as environmental DNA (eDNA) sampling can be used to detect invasive species before they become established in new systems, providing an early alert system to inform resource managers. Golden mussels were first detected in North America in October 2024 near the Port of Stockton in the San Francisco Estuary (SFE). The SFE is particularly vulnerable to invasion due to the access and connectivity provided by the presence of engineering infrastructure and shipping lanes. Collaborative efforts between public agencies and academic institutions are underway to develop a coordinated detection and response plan. Early detection followed by a rapid response is the best defense against prolific invasive species, such as the golden mussel.
Gorman, L. M.; Caon, S. L.; Huffmyer, A. S.; Byrne, M.; Dutertre, S.; Putnam, H. M.; Mills, S. C.
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Crown-of-thorns sea star (CoTS), Acanthaster cf. solaris, outbreaks are a major cause of hard coral cover decline across the west Pacific, threatening coral reefs. Coral taxa vary in susceptibility to CoTS predation from preferred (Acropora spp.) to non-preferred (Porites spp.), yet the mechanisms underlying these differences are poorly understood. We investigated coral defenses during an ongoing CoTS outbreak in Mo'orea, French Polynesia by examining gene expression (including putative toxin genes) in healthy and actively predated colonies of a preferred (Acropora hyacinthus) and a non-preferred (Porites sp.) coral prey species. During predation, A. hyacinthus exhibited molecular signatures of cellular stress responses involving oxidative stress signalling, inflammation, and tissue proteolysis. In contrast, Porites sp. showed enrichment of genes involved in mitochondrial metabolic adjustment and aerobic metabolism, suggesting metabolic compensation to maintain cellular function. Furthermore, A. hyacinthus demonstrated a reactive defense behaviour by differentially expressing toxins (e.g., kunitz-type neurotoxins) while Porites sp. employed constitutive expression of all putative toxins regardless of active predation, suggesting a proactive defense strategy. Together, these findings suggest that preferred and non-preferred coral prey exhibit fundamentally different molecular and defensive strategies during CoTS predation, shedding light on the evolutionary arms race between corals and their predators.
van Ooijen, R.; Buring, R.; Cornelius, A.; He, H.; van Oevelen, D.; Thieltges, D. W.; Hammoud, C.
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The impact of invasive species on marine ecosystems is rapidly increasing, where they often outcompete native species in the absence of natural enemies. The parasite release hypothesis states that the success of invasive species relates partly to the loss of natural parasites during introduction and lower susceptibility to native parasites. Barnacles are highly successful invaders due to broad environmental tolerance and dispersal via shipping, but whether parasite release also participates in this success remains unknown. In this study, we analyse parasite infection patterns in native and invasive barnacles in the Wadden Sea by surveying communities across tidal zones. Additionally, year-round molecular monitoring of larval stages and a literature review were used to track the distribution of the invasive Pacific barnacle Balanus glandula in Europe and document its appearance in the Wadden Sea. The long-established invasive Austrominius modestus dominated the high and middle intertidal zone, whereas native species (Balanus crenatus and Amphibalanus improvisus) prevailed in lower zones. Native and invasive barnacles differed in parasite infection frequency (mostly cestodes and trematodes). The native Semibalanus balanoides had the highest prevalence (27%), followed by the invasive A. modestus (11%), and no infections were found in B. glandula. Lower parasite prevalence in invasive barnacles is consistent with the hypothesis that parasite release supports invasion success. In the absence of competent parasites, B. glandula could impact native barnacles through competition. Continued monitoring of B. glandula is recommended to track its distribution, interactions with native species, and parasite acquisition, providing further insight into the parasite release hypothesis.
Liao, Y.; Szeto, B. C.-F.; Zhao, H.; Lin, H.; Chen, G.; Zhou, G.-J.; Mo, J.; Tan, A. L. S.; Wang, J.; Ip, J. C.-H.
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Chinese Bahaba (Bahaba taipingensis, Sciaenidae) is a Critically Endangered, Grade I state-protected marine fish in China. Reliable, non-invasive monitoring tools are urgently needed to inform conservation and restocking efforts. We developed and validated three TaqMan probe-based qPCR assays targeting mitochondrial 12S rRNA, ND5, and control region (D-loop) loci for species-specific detection of B. taipingensis. Primer-probe sets were designed from complete mitochondrial genomes and evaluated in silico against GenBank and in vitro against tissue DNA from B. taipingensis and closely related sciaenids, plus positive eDNA samples; sensitivity was quantified using serial dilutions of synthetic target DNA. All three assays showed high specificity and consistent amplification; 12S rRNA assay (Bhb_12S) was selected for field screening based on superior low-copy sensitivity and minimal by-products. We applied the Bhb_12S assay to 414 seawater samples collected from 23 sites in western Hong Kong during 2025 surveys, detecting B. taipingensis eDNA in the September samples (0.71-2.85 copies per L; mean 2.05), with positive detections confirmed by Sanger sequencing. Overall, these validated qPCR assays provide a robust molecular toolkit for non-invasive monitoring of B. taipingensis and will aid conservation planning, restocking evaluation, and long-term biodiversity assessments in the Pearl River Estuary and adjacent coastal waters.
Yepes Narvaez, V.; Rodriguez-Sanchez, A.; Atencia-Galindo, M. A.
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The marine biodiversity inhabiting rocky shores in the Colombian Pacific remains largely undocumented, primarily due to geographic isolation, logistical challenges, and socio-political constraints. To address the existing knowledge gap, we conducted an expedition to enhance baseline biodiversity knowledge in rocky shores by integrating multiple complementary approaches, including visual censuses, specimen collection with morphological identification, environmental DNA (eDNA) metabarcoding and DNA barcodes. eDNA samples were collected at four coastal sites adjacent to rocky substrates, along with biological specimens obtained from fourteen locations through SCUBA diving at depths ranging from 1 to 25 meters. Tissue samples were subjected to genomic DNA isolation, followed by the generation and validation of cytochrome c oxidase subunit I (COI) barcode sequences, which were subsequently corroborated through taxonomic assessment to ensure accurate species identification. eDNA metabarcoding analyses yielded over 7 million high-quality sequence reads. Although taxonomic resolution at the species level was constrained by the limited completeness of reference sequence databases, a total of 106 species and 83 families were successfully identified, predominantly within the classes Actinopteri, Chondrichthyes, and marine mammals. From the 769 specimens obtained we generated 871 sequences, including 414 validated COI barcodes representing 76 species across 64 families. The integration of DNA barcoding and eDNA approaches resulted in over 1,400 taxonomic detections spanning five phyla, with only six species shared between methodologies. Richness and diversity varied among sites, and revealed significant differences along the coastline between Jurado and Cupica Gulf. All sequences were deposited in BOLDsystems database under the CCBIO project and were visualized through OBIS and GBIF databases. These findings provide the first molecular-based baseline for rocky shore biodiversity in the Colombian Pacific, highlighting the value of integrative approaches for monitoring and conservation.
Ciric, E. N.; De Jonge, I.; Liu, R.; Cornelissen, J.; Convey, P.; Bokhorst, S.
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Rock surface weathering is a critical element in the process of early soil formation, in which lichens are thought to play a significant role. Crustose lichens, with a large area of rock-surface contact, are generally considered more influential in rock weathering, while foliose and fruticose growth forms, with more developed three-dimensional structure and less rock-surface contact, are rarely considered in this context. Here, we test the extent to which all three growth forms contribute to granitic rock surface weathering in Maritime Antarctic ecosystems, by quantifying rock hardness beneath foliose (n = 2 species), fruticose (n = 2) and crustose lichens (n= 5). Our data confirm that foliose lichens reduced rock surface hardness by 9%, to a lesser extent than crustose and foliose lichens (40% and 31% reduction, respectively). To disentangle whether these effects result from lichen-induced weathering or lichen preference for pre-weathered rock, we also analyzed a dated deglaciation sequence on granitic rocks from the Morteratsch Glacier forefield in the Swiss Alps. At this location, the impact of crustose lichens on rock substrate hardness generally increased with time since exposure from glacial retreat and with lichen thallus size. We conclude that lichen presence on rock surfaces significantly reduces rock hardness, with crustose lichens having a greater impact than foliose and fruticose forms, highlighting the potential role of lichens of all three growth forms in driving substrate breakdown and shaping early-stage ecosystem processes in polar and alpine regions.
Weaver, S.; Schwartz, T. S.; Gross, I. P.; Wibbels, T.; Wolak, M.
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A central goal when assessing patterns of population structure for conservation is to identify populations with unique genetic compositions. The use of genomic sequencing to identify distinct populations has become an increasingly popular method of delineating conservation units. Reduced costs associated with sequencing make it possible to generate larger, more informative datasets to assess genetic diversity within and among populations. In species that exhibit nest-site philopatry, genetic population structure can emerge on much finer scales, particularly in maternally inherited mitochondrial genomes. We demonstrate the feasibility and insight gained by using whole mitochondrial genome sequencing for evaluating population genetic structure and comparing to previous single marker studies in a vulnerable turtle. We used whole mitochondrial genome sequences from diamond-backed terrapin (Malaclemys terrapin) to evaluate whether nest-site philopatry generates fine-scale genetic structure among M. terrapin nesting beaches in western Mobile Bay (Alabama, USA). We then compared haplotype diversity between the Alabama population and M. terrapin populations from the Atlantic and Gulf coasts and evaluated the utility of using whole mitochondrial genomes rather than a subset of loci to characterize unique haplotypic diversity. We found no genetic structure associated with nest-site philopatry within Alabama, but none of the haplotypes in this region were shared with other Gulf Coast sites. This genetic structure is consistent with strong female natal philopatry within western Mobile Bay relative to the Gulf of Mexico and suggests that the Mobile Bay population is genetically unique relative to other M. terrapin populations and merits a unique conservation and management plan.
Mularo, A. J.; Jeon, J. Y.; Kirkwood, J. T.; Bernal, X. E.
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Commonly shared patterns of introduction and spread into new environmental conditions are often poorly understood, even though a better understanding of invasion history and niche dynamics among closely related invasive species could give practitioners valuable information to prevent and mitigate the impact of biological invasions. For this study, we investigate the invasion history and niche patterns among congeneric invasive species. We synthesize public occurrence data for five invasive alien anurans (Eleutherodactylus coqui, E. planirostris, E. johnstonei, E. antillensis, and E. martinicensis) to reconstruct their historic introductions and evaluate evidence for climatic niche shifts between their native and established non-native ranges. By pairing these data with current and future climate projections, we compare patterns of range shifts under future climate scenarios. Our results highlight different temporal and geographic introduction histories in invasive Eleutherodactylus, but a strong signal of colonizing broader invasive climatic niches, specifically into colder environmental conditions. Under future climate scenarios, suitable habitats for most of the non-native regions are likely to increase, although this increase is restricted under scenarios with high greenhouse gas emissions. Our results reveal that despite different invasion histories, the ability to spread into colder regions may be a conserved trait among the most widespread Eleutherodactylus anurans. This study ultimately shows that commonalities among closely related invasive species can provide clues about their ability to expand into areas with particular abiotic conditions, a pattern likely to be widespread, offering a potentially valuable opportunity to deploy targeted prevention strategies.
Srikanth, Y. V.; Pulla, S.; Namboothri, N.; D'Souza, E.
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Blue Economy models position aquaculture as a key pathway to securing global food security. Species selected for aquaculture typically show rapid growth, high stress tolerance and fast biomass accumulation, but these same traits may increase their potential to become invasive when introduced beyond their native range. We investigated the invasion history and current status of the commercially important red seaweed Kappaphycus alvarezii in the Palk Bay-Gulf of Mannar region of India. This is one of the worlds largest cultivation hubs, a climatically vulnerable marine biodiversity hotspot, and one of the three regions to report invasion. We combined in-water surveys, interviews with wild seaweed collectors, and a review of published literature to reconstruct the history of invasion and assess current status. Invasion has declined substantially, with interviews indicating that the disappearance of invasive populations began around 2014. We discuss several non-mutually exclusive explanations for this decline, including climate change, loss of coral substrate, herbivory, and reduced vitality of the seaweed. Although the decline in invasion is encouraging for coral reefs, our findings raise questions about the ecological and socioeconomic consequences of introducing non-native aquaculture species under Blue Economy initiatives, particularly in ecologically sensitive regions vulnerable to climate change.
Paulino, J.; Granadeiro, J. P.; Correia, E.; Catry, T.
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Surges in food availability create localized but intense foraging opportunities, often attracting multi-species consumer groups. Agricultural practices can trigger these surges, prompting bird associations. However, the strength and duration of the association, as well as its drivers, remain unclear. This study examines waterbird association with harvesting and ploughing events in rice fields. The duration and magnitude of these associations were determined and three hypotheses addressed to explain them: (1) increased food availability, (2) enhanced foraging success and (3) reduced time allocated to vigilance. Waterbird counts and GPS tracking revealed strong associations with management events. Bird numbers spiked during events but declined within one to two days. Food availability (and soil penetrability) increased significantly during events - crayfish and rice during harvesting, worms and soil penetrability during ploughing - supporting Hypothesis 1. However, this did not improve foraging performance (intake rate, foraging success), rejecting Hypothesis 2. Higher competition, interference or kleptoparasitism in these large mixed-species flocks may offset increased food availability benefits. Alternatively, functional responses of target species may limit prey intake due to physiological or behavioural constraints. Hypothesis 3 was also unsupported, as birds did not reduce vigilance. It is plausible that birds may be drawn to events by the perception of a feast, not actual benefits. Gregariousness and foraging behaviour by local enhancement may explain such associations. Results highlight the complexity of bird responses to food surges while suggesting waterbirds in rice fields maintain stable foraging performance during agricultural management events and otherwise, indicating resilience to agricultural timing shifts.
Suciu, S. R. A.; Azevedo, J. M. N.; O'Callaghan, S. A.; Serranito, B.; Jung, J.-L.
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The sperm whale is an emblematic species of the Azores archipelago. After a century of intensive whaling, the species has become a focal point for ecotourism since the late 1980s, enabling collaborative research during tourism activities. This study assessed the feasibility of using a citizen science based non-invasive sampling approach to evaluate the genetic diversity of local sperm whales. Seven local whale-watching companies contributed to collect 70 fecal samples and 34 sloughed skin fragments between 2019 and 2024. A 588-bp fragment of mitochondrial DNA Control Region (MCR) was successfully sequenced from 56 fecal samples and all skin fragments, yielding 90 MCR sequences assigned to 79 individual sperm whales. MCR sequences from both sources of the same individuals were in perfect agreement, validating the use of fecal samples for mitochondrial haplotype analysis - the first study to do so in sperm whales. Four MCR haplotypes, including a newly determined one, evidenced different maternal lineages within the Macaronesia population. Haplotypes showed a clear geographic pattern around Sao Miguel Island: one was restricted almost exclusively to the south coast, while the other three occurred predominantly on the north. This contrasted distribution is likely correlated to different matrilineal groups.
Mazal, L.; Malagoli, P.; Bourceret, A.; Selosse, M.-A.; Corenblit, D.; Till-bottraud, I.; Fumanal, B.
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Numerous studies on plant-plant interactions aim to distinguish positive from negative effects, especially among related individuals. Most studies interpret a reduction in biomass when grown with related individuals as kin recognition. However, these interactions can shift from positive to negative depending on environmental or biotic factors. We investigated these interactions in Black poplar (Populus nigra L.), a riparian tree species growing in high densities and stressful habitats, by examining the effects of relatedness and water deficit during early developmental stages. We set up two experiments where seedlings from four kin groups were competing with related or unrelated individuals, in well-watered versus water deficit environment, and studied their response through growth, root nitrogen uptake and mycorrhizal diversity. The four kin groups exhibit similar intrinsic growth capacities. However, for two kin groups, we found differences in competitive ability. Thus, we found that individuals responded differently depending on whether they were grown with related or unrelated individuals. Water deficit did not change the outcomes of interactions. Differences in competitive ability between kin groups was the most parsimonious interpretation, thus eliminating kin recognition as an explanation. Our study suggests that results obtained in general in kin studies must be carefully analyzed and that alternative interpretations, such as differences in competitive ability, must be tested before conclude wrongly to kin recognition. Our study also suggests that mycorrhizal communities develop differently according to the kin groups considered and can potentially have impacts on the growth of individuals.
Cattano, C.; Mininni, C.; Remmers, D.; Santoro, M.; Milazzo, M.
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The white shark Carcharodon carcharias (Linnaeus, 1758) is one of the most iconic and threatened marine predators globally and is listed as critically endangered by the IUCN in the Mediterranean Sea, where populations are primarily affected by fishing pressure and the degradation of critical habitats. Available information on Mediterranean white sharks mostly relies on fishing interactions and opportunistic surface records, thereby limiting evaluations on the species ecology. Here, we report an exceptionally rare underwater encounter with this species, documented by divers involved in an expedition aimed at removing ghost fishing gear from a World War II shipwreck in the Strait of Sicily (SoS), central Mediterranean. Given the exceptional nature of this observation, we analysed the video footage in detail with the aim of providing morphological information and novel insights into the species ecology. The footage analysis also allowed close observations on behavioural aspects and on interspecific and parasitic associations, thus providing information that is rarely achievable through surface sightings or from captured individuals, which historically represent the majority of records for this species in the region. To contextualize this observation within the SoS--an area suggested to function as a nursery and reproductive ground for the species--we also provide an updated compilation of records reported in the scientific literature over the last decade, adding 18 new records to existing datasets. This study highlights the value of shipwrecks as observation sites for rare and elusive species, and underscores the importance of non-invasive, video-based approaches in advancing knowledge of a species whose ecology in the Mediterranean remains poorly understood.
van Hulten, D.; Liggins, L.; Yuval, M.; Sewell, M. A.; Bongaerts, P.
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Local and global stressors are driving declines in competitive reef-building corals and favouring stress-tolerant, weedy species. In many of these taxa, rapid asexual reproductive strategies promote the proliferation of existing genotypes at small spatial scales, potentially leading to the formation of monospecific stands ("carpets"). Such reproductive strategies raise concerns for the intraspecific diversity and resilience of future reefs. The genetic structure of these spatially dominant, weedy corals remains poorly understood, in part because densely aggregated colonies lack distinct boundaries, hindering the use of standard sampling designs. We employed a photogrammetry-guided, spatially explicit sampling approach to assess the genotypic diversity and genet distribution in the increasingly dominant scleractinian coral Madracis auretenra across three reef sites in Curacao. Cover of M. auretenra varied widely among sites and reef zones (4.1-26.2%). Genome-wide genotyping of 678 samples collected at 1-m intervals identified two genetically distinct lineages comprising 90% and 10% of the samples, with contrasting genotypic diversity (genet-to-ramet ratio Ng/N = 0.287 and 0.481, respectively). Monospecific stands (n = 20) usually contained multiple genotypes and occasionally even both lineages, but were typically dominated by a single genotype (mean 65.5%, minimum 42.3%). Simulated sampling demonstrated that combining monostands, patches, and isolated colonies would maximise captured genotypic diversity for restoration applications. Our results demonstrate that photogrammetry-guided sampling provides an effective, unbiased framework for population-genetic studies of monostand-forming corals, while revealing substantial genotypic diversity within a species that is becoming increasingly dominant on southern Caribbean reefs.
Tajudeen, T. T.; Ardon, M.; Tulbure, M.; Martin, K. L.
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Coastal forests are increasingly threatened by saturated soil and elevated salinity levels resulting from sea level rise, saltwater intrusion, and storm surges. In response to rising salinization and flooding, healthy coastal forests that rely on freshwater (both wetland forests and low-elevation upland forests) are transitioning into landscapes dominated by dead or dying trees, known as ghost forests. Situated among salt-tolerant shrubs and grasses, ghost forests eventually become marshes or open water. Here, our main objective was to quantify the dynamics and pathways of these forest landscape conversions, as well as the factors contributing to the changes, which is vital for understanding the progression of coastal ecosystem degradation and forecasting future changes. We focused first on identifying the best method to track forest landscape change by exploring the role of multiple remote sensing indices (i.e., multispectral, bi-seasonal, topographical, and phenological metrics) in enhancing the performance of deep learning models (convolutional neural networks, CNNs) for land cover classification in the coastal plain of North Carolina using surface reflectance of Landsat 8 and Sentinel-2 images. Then, we used the best available data (Landsat 8) to understand long-term change and identify patterns of land cover change from 1985 to 2021. Our study reveals that incorporating phenology and topographical indices enhances the separability of the ghost forests class from all other vegetation classes. In our assessment, the higher-resolution Sentinel-2 data (F1 Score = 96.3) outperformed Landsat images (F1 score = 93.4) for the 2021 co-available year. However, Landsat remains an important tool used due to its long-term data record. Therefore, we used Landsat to determine that 21% of forests were lost between 1985 and 2021, and that the rate of loss is increasing. Between 2010 and 2021, 23,876 ha of forest were converted to marsh, ghost forest, and shrub, which is 1.5 times higher than the 16,968 ha lost between 1985 and 2010. These conversions from forest to ghost forest and marshes were driven primarily by proximity to the channel, salinity, and the increasing rate of relative sea level rise (RSLR), which are the key environmental drivers of observed changes. By quantifying these changes, we highlight regions most vulnerable to environmental stressors, providing a basis for targeted conservation strategies.
Berry, M.; Austad, B.; Aarestrup, K.; Davidsen, J. G.; Nevoux, M.; Alexandre, C. M.; Silva, S. S.; Stevens, J. R.; King, R. A.; Thorstad, E. B.; Höjesjö, J.
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Downstream migration and sea entry are periods of high mortality for sea trout smolts and migration timing is a critical aspect of survival. We aimed to investigate migration timing of PIT-tagged sea trout smolts across a latitudinal gradient in five freshwater systems across Europe: Norway, Sweden, Denmark, France and Portugal. In two systems, smolt migration was further examined to assess a) differences in sex, body size and condition between autumn and spring migrants; b) the influence of spatial origin within the stream; and c) relationships between individual body size and migration date. Tagged smolts were not detected migrating in the Portuguese watershed. Spring migration timing differed significantly between watersheds in Norway, Sweden, Denmark and France. Generally, there was a trend of earlier migration at lower latitudes. Autumn vs spring migration was examined in Gudso-Denmark. Autumn migrants were larger in both length and mass, with no differences in sex ratios or body condition. Fish originating from an upstream site were more likely to migrate in the autumn compared to the spring and vice versa. Size dependent migration was found in the Swedish system, Haga [a]-Sweden, with larger individuals migrating earlier in the spring than smaller individuals. Outward-migrating smolts were also more likely to originate from a downstream site than an upstream site. Overall, these results show both large-scale geographic and fine-scale individual influences on migration timing. Given that climate change may have large impacts on migration patterns in sea trout, understanding variability in migratory patterns across a latitudinal gradient is an important tool for predicting responses to environmental changes.